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Gene expression analysis of 46 cancer associated genes by high throughput real-time qPCR in canine: Facilitate the biomarker identification KCI 등재

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예방수의학회지 (Journal of Preventive Veterinary Medicine)
한국예방수의학회(구 한국수의공중보건학회) (The Korean Society of Preventive Veterinary Medicine)
초록

The prevalence of cancer in companion dogs is growing nowadays with the increasing worldwide population of domestic dogs. Since there is a less established standard of care in veterinary medicine, investigational treatments, such as the development of biomarkers can be considered as a therapeutic intervention for early diagnosis. Despite the enormous efforts that have been invested in the search of biomarkers, still, there is a need for easy detection of significant biological markers for predicting canine cancers at an early stage. In this study, we have analyzed the expression pattern of previously reported 46 canine cancer-associated candidate genes in blood specimens using real-time qPCR. We hypothesized that analysis of gene expression in blood would provide preliminary evidence of local or systemic immunogenic response which further contribute to the easy and early diagnosis of canine cancer from blood specimen as an analytical tool. The datasets included a total of 22 blood samples collected from different breeds of dogs diagnosed with cancer and five from healthy normal dogs. RT-qPCR analysis was performed by employing the SYBR Green PCR mix to assess the expression of these 46 genes in a total of 27 samples. From our result, a total of nine genes (ROS1, C1QA, CD48, IL1b, TLR2, IL2R, CHI3L1, CTSS, and TLR7) were found to be significantly up-regulated (p < 0.05 and p < 0.01) in the cancer samples compared to non-cancer samples. The relative expression level of ROS1, C1QA, CD48, IL1b, TLR2, IL2R, CHI3L1, CTSS, and TLR7 genes was 5.74, 4.78, 3.94, 2.94, 2.57, 2.53, 2.50, 2.04, and 2.57, respectively, in cancer samples compared to non-cancer samples. Thus, our results reveal several highly expressed cancer genes that can be therapeutic target genes for further testing in canine cancers.

목차
Abstract
INTRODUCTION
MATERIALS AND METHODS
RESULTS AND DISCUSSION
CONCLUSION
ACKNOWLEDGEMENTS
REFERENCES
저자
  • Sunirmal Sheet(Animal Genome and Bioinformatics, National Institute of Animal Science, RDA, Wanju, 55365, Republic of Korea)
  • Hana Kim(Animal Genome and Bioinformatics, National Institute of Animal Science, RDA, Wanju, 55365, Republic of Korea)
  • Minjeong Ko(Animal Genome and Bioinformatics, National Institute of Animal Science, RDA, Wanju, 55365, Republic of Korea)
  • Nayeon Kim(Animal Genome and Bioinformatics, National Institute of Animal Science, RDA, Wanju, 55365, Republic of Korea)
  • Kyoung-Won Seo(2Department of Veterinary Internal Medicine, College of Veterinary Medicine, Seoul National University, 08826, Seoul, Republic of Korea)
  • Bong-Hwan Choi(Animal Genome and Bioinformatics, National Institute of Animal Science, RDA, Wanju, 55365, Republic of Korea, Animal Genetic Resources Research Center, National Institute of Animal Science, RDA, Hamyang, 50000, Republic of Korea) Corresponding author
  • Kyung-Tai Lee(Animal Genome and Bioinformatics, National Institute of Animal Science, RDA, Wanju, 55365, Republic of Korea) Corresponding author