For this study, we established a system for the CPU cooling performance evaluation and conducted performance tests on air-cooling and water-cooling to understand the effect of the CPU cooling method on performance. For the performance evaluation, the test chamber and water-cooling system were set up, the workload S/W was selected, and a case file was created. In the case of the air-cooling, the CPU temperature is sensitively affected by the outside air temperature, the direction of the board installation, and the influence of the airflow formed around it, and may cause a lot of fluctuations in the CPU temperature. When the water-cooling system was applied, the CPU temperature decreased from 75℃℃ to 37℃ compared to the air-cooled type under the test conditions of 28.5℃ and 3LPM cooling water supply temperature and flow rate. As the CPU clock speed increased due to the decrease in temperature, it was found that the job execution time was reduced by 15~23%. In the future, it is expected that using this performance evaluation environment established through this study will enable us to easily conduct test evaluations for various processors, cooling methods, and changes in operating conditions.