Glyphosate, a worldwide most used herbicides, can have complex implications for terrestrial ecosystems, extending beyond its intended target, weed control. This study investigated the cascading effects of glyphosate application on both plant and collembolan communities. Our findings reveal that glyphosate application can reduce the richness of plant communities, and these effects can be pronounced in areas with low initial plant diversity. Furthermore, our results confirm that the fluctuations in plant community composition induced by glyphosate application can also impact the richness of collembolan communities. This research highlights the importance of considering both plant and invertebrate communities when assessing the impacts of herbicide use in agroecosystems.