This study investigated the applicability of a metabolomics approach based on ultra-performance liquid chromatography to quadrupole time-of-flight spectrometry (UPLC-QTOF/MS) combined with multivariate statistical analysis for the discrimination of gamma-irradiated soybeans. Domestically produced, non-irradiated organic soybeans were used as the control, while soybeans irradiated at absorbed doses of 1, 3, and 5 kGy were used as the experimental groups. A total of 51 metabolites were identified through UPLC-QTOF/MS analysis of soybean extracts. Partial least squares-discriminant analysis (PLS-DA) revealed that the metabolic profiles of non-irradiated and irradiated soybeans were significantly separated in both positive and negative ion modes (p<0.05). To identify the metabolites contributing to group discrimination, compounds satisfying both statistical significance (p<0.05) and variable importance in projection (VIP>0.5). Among these, histidine, fumaric acid, malonic acid, uric acid, adenosine, cis-aconitic acid, xanthine, dihydrodaidzein, genistein, kaempferol, and soyasaponin Be showed significant dose-dependent differences. They were therefore proposed as potential biomarkers for discrimination gamma-irradiated soybeans. These results indicate that UPLC-QTOF/MS-based metabolomic profiling combined with multivariate analysis is an effective analytical tool for the identification and authentication of gamma-irradiated soybeans.