This research is to investigate the performance analysis of methanol fuel cell for flow channel with four different types of the channel (Serpentine I, II, Inter-digitated, Parallel) in the fuel cell stack. Velocity, pressure, temperature and density distributions of fluid over the flow domain of the flow channel are numerically calculated for the optimum design of flow channel with uniform inlet velocity. According to better water discharge and mutual gas reaction with low pressure drop and high density difference between inlet and outlet in the flow channel, Serpentine I type is of highest performance of the flow channel shapes in the present methanol fuel cell models.