The government has recently introduced the human rights management system of public institutions in accordance with the OECD guidelines for multinational corporations and the UN guidelines for business and human rights implementation. For this reason, public institutions receive a human rights impact assessment to be reflected in the institutional management evaluation based on the human rights management manual of public institutions issued by the National Human Rights Commission of Korea. Human rights impact assessment is an institution’s management activities that identify and evaluate actual and potential human rights risks in advance and is divided into institutional and business operations. The institutional operation evaluation is conducted in 10 areas, including human rights management system, employment, labor rights, industrial safety, supply chain, and local residents’ protection, and the project operation evaluation is conducted by itself or by a specialized institution by selecting main projects and fields that can affect human rights of stakeholders. This study compares and analyzes the results of the human rights impact assessment of public institutions and specialized institutions and derives how much they contribute to improving human rights risk and respect for human rights, and what will be improved in the future. Therefore, the results of this study are expected to be of great help in the introduction and internalization of the human rights management system of public institutions.