Aurantii Fructus Immature (AFI) and Aurantii Fructus (AF) are two important traditional Chinese herbs. As the harvesting time varies, the medicinal value of the plants is not uniform. Consequently, it has been difficult to quickly recognize them within the realm of traditional Chinese medicine. Separation and detection technologies are employed in combination to create fingerprints for identification. We proposed the utilization of graphene-assisted electrochemical fingerprint technology to acquire fingerprints of two varieties of medicinal materials. Simultaneously, we also obtained their fingerprints through HPLC. Two fingerprint recognition technologies were compared for their effectiveness. The findings demonstrate that the signals obtained through electrochemical fingerprinting have a higher recognition rate.