Application of the membrane process to wastewater treatment and reuse has been increasing due to water shortage, water pollution and an increase in water demand. Membrane fouling including biofouling should be controlled to extend its application. In this study, modulation of diffusible signal factor (DSF) system, the quorum sensing (QS) system that regulates EPS formation by microorganisms, was considered as a promising option to manage biofouling. Among many DSF compounds, cis -2-Decenoic acids (CDA) was selected. The experimental results showed that, as the CDA concentration increased, the density and number of stained cells decreased. The lowest density was observed when the CDA concentration of 300 nM was applied. The EPS on membrane surface decreased with increasing concentration of CDA. The CDA dosing also affected the EPS composition. At the 300 nM CDA dose, the total EPS reduced by up to 57% and the protein fraction by 35%. This study revealed the biofilm reduction effect of CDA under various conditions for MBR sludge. The application of CDA can be adapted to control biofouling in the MBR process.