Fungi are organisms that must be monitored and controlled in order to preserve valuable paper records. They reduce the quality of paper records by degradation and/or discoloration. As an effort to understand fungal contamination in the National Archives of Korea, the concentration of fungi in the indoor air of the unsterilized record rooms has been reported. However, what species are present in the facilities is not much known. In the present study, we examined the fungi isolated from the National Archives of Korea and found among them that there are fungal species which are newly documented in Korea. They were identified based on morphological properties and nucleotide sequences analysis of the polymerase chain reaction-amplified the internal transcribed spacer region of rDNA, calmodulin gene, and beta-tubulin gene. We report Cladosporium parahalotolerans, Cladosporium subuliforme, Ochroconis mirabilis, Penicillium angulare, and Penicillium fundyense as new instances of fungal species in Korea. Among these five species, P. angulare is known to able to produce cellulase and O. mirabilis as an opportunistic pathogen of human and animals.