Apoptosis has been regarded as a therapeutic target because apoptosis is typically disturbed in human cancer. Silymarin found in the seeds of the milk thistle (Silybum marianum) has been reported to exert anti-cancer properties through apoptosis. This study was performed to investigate the molecular target for silymarin-mediated apoptosis in human colorectal cancer cells. Silymarin reduced the cell viability and induced an apoptosis in human colorectal cancer cells. ATF3 overexpression increased PARP cleavage by silymarin. Increased ATF3 expression in both protein and mRNA was observed in silymarin-treated cells. In addition, silymarin increased the luciferase activity of ATF3 promoter. Inhibition of JNK and IκK-α blocked silymarin-mediated ATF3 expression. The results suggest that silymarin induces apoptosis through JNK and IκKα-dependent ATF3 expression in human colorectal cancer cells.

Spatial- and temporal-specific expression patterns are primarily regulated at the transcriptional level by the promoter. Therefore, it is important to determine the binding motifs of transcription factors to understand the networks associated with embryogenesis. Here, we used a protein-binding microarray (PBM) to determine the binding motif of OsSMF1, which is a basic leucine zipper transcription factor that is involved in the regulation of rice seed maturation. OsSMF1 (previously called RISBZ1) is known to interact with GCN4 motifs (TGA(G/C)TCA) to regulate seed storage proteins (SSPs). In addition, OsSMF1 (also known as OsbZIP58) functions as a key regulator of starch synthesis in the rice seed. Quadruple 9-mer-based PBM (Q9-PBM) and electrophoretic mobility shift assay (EMSA) experiments revealed that OsSMF1 binds to the ACGT (CCACGT(C/G)), GCN4 (TGA(G/C)TCA), and GCN4-like (GGATGAC) motifs with Kd values of 0.3353 μM, 0.6458 μM, and 1.117 μM, respectively. We also identified 60 putative OsSMF1 target genes using a combination of data from expression microarrays and RiceArrayNet (RAN) analysis. Of these OsSMF1 target genes, 20, 22, and 17 genes contained ACGT, GCN4, and GCN4-like motifs within the 2-kb promoter region, respectively. In addition to known target genes, we also identified 35 potential OsSMF1 target genes that have not been previously described in immature seeds. We also confirmed that OsSMF1 directly regulates Os03g0168500 (thioredoxin-related protein), RPBF, NAC6, and two hypothetical proteins (Os12g0621600 and Os11g0582400) in vivo. This study suggests that OsSMF1 functions in a wide range of seed development processes with specific binding affinities for three DNA binding motifs

Lhx8 is a member of the LIM-homeobox transcription factor family expressed in the mouse ovary. We discovered that Lhx8 knockout females lose oocytes within 7 days after birth. Lhx8–/–ovaries fail to maintain the primordial follicles and growing follicles. Lhx8–/–ovaries misexpress numerous oocyte-specific genes such as H1foo and Nlrp14. The molecular mechanism of there gulation of Lhx8 in the oocyte has not been described. We examined to characterize Lhx8 DNA binding elements and to identify its direct target genes in the oocyte. CAST was performed using glutathione transferase Lhx8 homeodomain fusion protein (GST-LHX8HD). A 15-bp random sequence flanked by 20-bp of fixed sequences were incubated with purified GST-LHX8HD protein. Unbound DNA was washed with binding reaction buffer. Bound DNA was eluted and re-amplified by PCR for the next round of CAST. Final PCR products were cloned and sequenced to derive consensus binding sequence. EMSA was performed using 32P-labeled oligomers. Binding reactions were conducted by incubating 32P-labeled probes with purified protein. Dual luciferase assays were carried out with extracts of total HEK293 cell which was transfected by the pGL4-promoter vector containing three artificial repeats of LBE(3xLBE-Luc) and overexpression vector carrying the Lhx8 homeodomain as recommended by Promega. We identified several cis-acting sites, TGATTG as Lhx8 DNA binding elements (LBE) using a library of randomly generated oligonucleotides by CAST. EMSA reslut shows that Lhx8 preferentially binds to the oligomer including Lhx8 binding element (TGATTG) with high affinity. In addition, we found that the relative luciferase activity of reporter construct containing three copies of TGATTG was increased by 2.3-fold with Lhx8 overexpression. These results suggest that Lhx8 preferentially binds Lhx8 DNA binding element, TGATTG, and can transactivate reporter genes through the LBE. The transcription of Lhx8 target gene in oocytes directly might be regulated by its during early folliculogenesis.