Honey bee swarming is a naturally occurring phenomenon under the conditions of population increase, climate change and pollen deficit. However, unexpected swarming usually results in loss of bee colony, it poses a considerable trouble in bee keeping. In an attempt to search for molecular markers that can predict the swarming behavior, transcriptional profiling was conducted and compared between the heads of swarming group and the remaining group in the same honey bee colonies. A total of 25,551 transcripts were initially identified and 1,144 differentially expressed genes between the two groups were sorted by FC2 (fold change) cut-off value. Several transcripts, including 6 apidermin (structurally novel cuticular protein)-related, 16 cuticular and 3 odorant binding proteins, showed lower expression levels in the swarming group compared with the remaining group (FC range of –2.17 to –667.48, -2.04 to –54.34 and -2.08 to –21.34 respectively). Pathway analyses are currently in progress to understand the physiological and metabolic differences between swarming and remaining groups of honey bees.