Biodiesel is a traditional energy field that can replace low-quality marine fuels for ships and various studies have been conducted. Since the 2000s, Korea has introduced a mandatory supply system of biodiesel for domestic vehicle diesel, gradually raising the blending ratio from 0.5% to 3.5%, and is expected to raise the mandatory blending ratio to about 8.0% by 2030. Therefore, in this study attempted to blend high-quality samples that meet the biodiesel quality standards manufactured by domestic companies with MGO in ratios ranging from 0 to 60%. We utilized a 1-ton combustion chamber to compare and analyze the exhaust gas emissions characteristics. As a result, in the BD60 condition, which represents the maximum range in this study, the O2 increased by approximately 1.5%p, and CO2 tended to decrease by 1.1%p. NOx decreased by approximately 18.2%p from 34.1 ppm to 27.9 ppm. In the case of SOx, a very low concentration of 0.08 ppm was detected under the BD0 condition, and it was undetectable under all other conditions containing biodiesel. This suggests that MGO itself has excellent low-sulfur oil quality and can implement zero SOx through biodiesel mixing. Furthermore the combustion efficiency decreased by approximately 1.91%, from 72% to 70.2%, and the exhaust gas temperature also decreased by about 4.5%p. However despite the lower calorific value of biodiesel compared to MGO, it demonstrated relatively close thermal output per unit content. This indicates sufficient potential for biodiesel to serve as a viable alternative fuel for ships in the future.