This study analyzes the process of establishing BSC of research institute. This case could be a reference to other research institute for BSC introduction. In this study, the characteristics of A institute BSC is reviewed. A institute set up the BSC system at July, 2006 and made it possible to automatically connect the performance measurement and evaluation of department by using KPI. A institute verify the effectiveness of BSC performance using the SFO(Strategy Focused Organization) assessment.