Pavement performance usually depends on the pavement’s material property, traffic and environmental conditions. Current pavement design programs such as the Mechanistic Empirical Pavement Design Guide use these factors in assessing the pavement life and performance in terms of different distresses like rutting and fatigue cracking. Theoretically, the cracking and rutting behaviour of pavements are based on accumulated strains experienced by the pavement which is brought by the weight and loading speed of vehicles. A steady state loading device was used in the field to evaluate pavement deflection’s behaviour in varying loading frequencies. It was observed that the pavement deflection increases as the loading frequency also increases until it approaches a certain frequency wherein the deflection decreases thereafter. In this study, a three-dimensional finite element pavement model was established using ABAQUS wherein the effect of the vehicle’s loading frequencies was analysed. The calculated static deflection and stress from the finite element (FE) model were found to have good correlation with the KENPAVE measured deflection and stress. The deflections of different pavement conditions were further studied and analysed by generating several pavement geometries and strength from the FE model using a frequency sweep response analysis. It was found that the geometric condition and the current modulus of the pavement can amplify the pavement deflection by a factor, β, depending on the loading frequency. The peak deflection was found to be occurring when the loading frequency approaches one of the pavement’s natural frequencies. Based on the finding from this study, the natural frequency is an important factor to be considered in designing pavements. Further study is recommended to understand more on how to minimize the effect of natural frequency to pavement life.