로스해의 Iselin Bank 인근에서 채취한 RS15-GC41코어로부터 규조를 분석한 결과 총 24속 35종의 규조를 감정하였으며, 규조 개체수 농도는 0.2-28.6×10 6 /g 범위에 해당하였다. 규조 군집 조성에 의해 4개의 규조 군집대를 설정 하였으며 규조 군집의 변화는 거의 10만년을 주기로 변화 하였다. Marine Isotope Stages 1-11 시기에 RS15-GC41이 퇴적되는 동안 간빙기(Interglacial)에는 open ocean을 지시하는 Rhizosolenia styliformis, Fragilariopsis kerguelensis와 Thalassionema nitzschioides등이 풍부하게 산출되며, 빙기(Glacial)에는 sea-ice종인 Actinocyclus actinocyclus의 산출이 풍부하게 나타난다. MIS 7, 9와 11의 간빙기 동안 MIS 1, 3과 5 시기보다 sea-ice의 분포가 더 넓고 지속 기간이 더 오래 계속되었음을 알 수 있다. Paralia sulcata는 이 시기(MIS 7, 9와 11) 동안 해류에 의한 ice-rafted debris의 유입과 함께 연안지역으로부터 재이동 되었음을 뒷받침 해준다.

남극 벨링스하우젠 해(Bellingshausen Sea)의 동쪽 대륙붕과 대륙대에 위치한 중력코어(BS17-GC15, BS17-GC04)를 2017년 ANA07D 탐사 동안 획득하였다. 두 코어를 이용하여 벨링스하우젠 해의 해양 퇴적물 내 빙기-간빙기에 따른 점토광물의 분포와 성인을 조사하였다. 두 코어에 대해 퇴적상의 특성을 기술하고, 입도 분석, X선 회절 분석을 실시하여 점토광물의 조성 변화를 관찰하였다. 퇴적학적 특성에 따라 BS17-GC15 코어는 세 개의 퇴적상들로 구분되며 이들은 마지막 빙하기, 전이퇴적상, 간빙기 시기의 퇴적작용에 의해 형성된 것으로 보인다. BS17-GC04 코어는 하부에 빙하기저부 기원의 저탁류의 조합으로 퇴적되는 저탁류 퇴적층과 니질층이 관찰되고, 위쪽으로 올라갈수록 실트질 엽층이 나타나며 상부에서는 생물교란 흔적이 포함된 반원양성 니질층이 나타난다. 퇴적상이 변함에 따라 점토광물의 함량비도 다르게 나타난다. BS17-GC15 코어는 시기에 따라 일라이트가 평균 28.4~44.5 %로 가장 큰 변화를 보이고, 스멕타이트는 빙하기 때 평균 31.1 %에서 20 %로 감소하였다가 간빙기 때 25.1 %로 다시 증가하는 양상을 보였다. 녹니석과 카올리나이트의 합은 빙하기 때 평균 40.5 %에서 간빙기 때 30.4 %로 감소하였다. 빙하기 동안 퇴적물이 남극 반도로부터 유입되기 때문에 높은 일라이트와 녹니석 함량을 보인다. 반면, 대륙대에 위치한 BS17-GC04 코어는 빙하기 때 스멕타이트의 함량이 평균 47.2 %에서 상부로 갈수록 평균 20.6 %까지 감소하고 일라이트는 하부에서 평균 21.3 %에서 43.2 %로 증가한다. 빙하기 동안의 높은 스멕타이트 함량은 근처의 스멕타이트가 풍부한 퇴적물인 피터 1세 섬에서 퇴적물이 남극순환류에 의해 운반되었을 것으로 예상되고, 그 이후 간빙기에는 상대적으로 서쪽으로 흐르는 등수심 해류의 영향으로 동쪽의 벨링스하우젠 해의 대륙붕 퇴적물로부터 일라이트와 클로라이트가 풍부한 퇴적물이 운반되었을 것이라 예상된다.

To obtain a better insight into a possible common regulatory mechanism shared in response to heat and cold stresses in model monocot plant, expression profiling for several selected transcripts of rice (O. sativa L.) was examined from meiotic stage panicle samples of a number of different cultivars including both heat/cold tolerant and susceptible varieties. Induction of several of these genes in response to heat stress treatment was observed across all different rice varieties tested, but no differential induction kinetics between the heat-tolerant and susceptible varieties was discernable for these genes. On the other hand, a few genes that are known to be involved in ROS signaling showed different induction kinetics between the tolerant and susceptible varieties, suggesting that these genes might be playing a key role in conferring the heat/cold stress tolerance at reproductive stage of tolerant rice varieties. This approach was also augmented by comparative gene expression data analyses, utilizing expression data of other monocots and dicots model plants available in the database. Based upon these results, a preliminary gene pyramiding effort to estimate contributing factor of several selected alleles after putting these genes together is underway. This work was supported by a grant from the Next-Generation BioGreen 21 Program (Plant Molecular Breeding Center No.PJ009076), Rural Development Administration, Republic of Korea.

New QTLs were identified for high grain yield with long panicle in rice. A total of 137 F15 recombinant inbred lines (RILs) derived from a cross between Dasanbyeo (Tongil) and TR22183 (japonica), together with the parents were evaluated for 16 agronomic traits at IRRI in dry and wet seasons under different phosphorus (P) and irrigation conditions. A linkage map was constructed using 236 polymorphic markers in 384-plex Bead Xpress indica-japonica single nucleotide polymorphism (SNP) platform. P and water effects were significant in both wet and dry seasons. Both parents and RILs showed varying degree of sensitivities to scarcities in water and phosphorus in terms of panicle length. Collocating with 20 yield-related QTLs, the panicle QTLs on chromosomes 1 (pl01) ,2 (pl02), 9 (pl09), and 11 (pl11) under low P and rainfed conditions were identified. RILs with TR22183 allele at pl11 showed longer panicle length under low P input rainfed condition in dry and wet seasons. The whole-genome sequences of the two varieties are being compared to design the molecular markers for fine-mapping and candidate gene identification. Based on Nipponbare MSU 7.0 annotation, a total of 1464 genes with predicted function were identified within the four QTL regions. Candidate genes identified in other studies for QTLs under low P and water conditions, such as calmodulin and dehydrin genes, were targeted for designing molecular markers for fine-mapping and expression analysis. Pyramiding the panicle length QTLs correlating with yield QTLs will provide an opportunity of improving yield traits.

Hybrid sterility is a critical barrier of inter-subspecific crosses in rice. However, hybrid sterility can be overcome by wide compatibility variety. The HWC-line of rice had slender grain shape, tall culm length, wide compatibility with both indica and japonica cultivars. For QTL analysis of HWC-line, two F2 populations were derived from the crosses between the HWC-line and each of two Korean variety, Dasan (Korean Tongil-type cultivar) and Hwacheong (temperate japonica cultivar). In the cross between HWC-line/Dasan (HD), 93 STS markers and 13 SSR markers were mapped on 12 chromosomes. In the population from HWC-line/Hwacheong (HH) cross, 28 STS markers, 29 SSR markers and 1 FNP marker were mapped on 11 chromosomes. Eight agronomic characters were evaluated for QTL analysis in two F2 populations and parents. The F2 population from HD cross revealed 21 M-QTLs and 3 E-QTL for culm length, spikelet per panicle, spikelet fertility, grain length, grain width, grain shape and 100 grains weight. 8 QTLs of culm length, grain length, grain width and grain shape were newly detected in this study. In the F2 population from HH cross, 17 M-QTLs were detected for culm length, panicle length, spikelet fertility, grain length, grain width, grain shape and 100 grains weight. 6 QTLs of culm length, grain length, grain width and grain shape were newly found in this study. These QTLs will be able to provide basic information on putative functional genes related with agronomic characters and promote breeding new rice cultivar. HWC-line could be used as bridge for inter-subspecies crosses and in hybrid breeding.

Rice hulls remain closed throughout the ripening period to maintain internal humidity of the grains. An Open-hull sterile mutant was induced by N-methyl-N-nitrosourea(MNU) treatment on Sinsunchalbyeo rice, a japonica type. This mutant showed open hulls even in the ripening stages and fully mature grains. In addition, several altered characteristics were observed, including of narrowed palea, decreased grain size, partial pollen sterility and erect panicle. Microscopic analysis showed that the palea was positioned slightly inside the lemma, and the size of palea decreased in the mutant. Genetic analysis of F2 and F3 segregation populations derived from the cross between the Open-hull sterile mutant (Oryza sativa ssp. japonica) and Milyang23 (O. sativa ssp. indica) indicated that the Open-hull trait was controlled by a single recessive allele. The fine-mapping with STS (sequence tagged site) markers revealed that the mutant gene was located on the short arm of chromosome 3. We were able to narrow it down until 30.6Kb where three candidate genes were found.

β-carotene hydroxylase (BCH) has been implicated as a key enzyme conferring a stress tolerant mechanism in plants by production of carotenoids, which serve as protectants against photoinhibition and precursor of ABA biosynthesis. We previously cloned a gene encoding a novel cytosolic form of BCH (GmBCH1) from soybean (Glycine max) whose expression increased during nodulation with Bradyrhizobium japonicum. In the present work we extended our study to three GmBCHs as soybean is an allotetraploid, and examined their possible role(s) in nodule development. In situ hybridization revealed the expression of three GmBCHs (GmBCH1, GmBCH2, and GmBCH3) in the infected cells of root nodules, and their enzymatic activities were confirmed by functional assays in E. coli. Localization of GmBCHs by transfecting Arabidopsis protoplasts with GFP fusions and by EM immunogold detection in soybean nodules indicated that GmBCH2 and GmBCH3 were present in plastids while GmBCH1 appeared to be cytosolic. RNAi of the GmBCHs severely impaired nitrogen fixation as well as nodule development. Surprisingly, we failed to detect zeaxanthin, a product of GmBCH, or any other carotenoids, in nodules. We therefore examined the possibility that most of the carotenoids in nodules are converted or cleaved to other compounds. We detected the expression of some carotenoid cleavage dioxygenases (GmCCDs) in wild-type nodules, and also a reduced amount of zeaxanthin in GmCCD8-expressing E. coli, suggesting cleavage of the carotenoid. In view of these findings we propose that carotenoids such as zeaxanthin synthesized in root nodules are cleaved by GmCCDs, and we discuss the possible roles of the carotenoid cleavage products in nodulation.

Recent global warming and climate change has presented greater challenge to the global agriculture of having to cope with more severe adversaries from various abiotic stress conditions including drought, cold, and heat. As a preliminary step towards developing a heat-tolerant japonica rice variety through molecular breeding, we examined and compared expression of several genes that have been reported being expressed specifically during rice panicle development in different rice varieties after subjecting them heat stress. Although the induction of these transcripts upon heat treatment was invariably observed in all rice varieties tested, the magnitude and kinetics of the induction were found to be different among these varieties, suggesting possible functional implication of these genes in conferring heat tolerant phenotype during reproductive organ development of these plants. General protein synthesis activity as well as pollen viability incurred by the heat stress treatment were also monitored in these plants and the result showed a close correlation overall with the induction dynamic of these transcripts under heat stress. Therefore, these genes, together with the ones involved in the regulatory network for the expression of them, could serve as candidates for useful markers with which molecular breeding of heat tolerant japonica rice can be facilitated.

Plant height is an important agronomic trait that affects grain yield. Previously, we reported a novel semi-dominant dwarf mutant, D-h, derived from chemical mutagenesis using N-methyl-N-nitrosourea(MNU) on a japonica rice cultivar, Hwacheongbyeo. In this study, we cloned the gene responsible for the dwarf mutant using the map-based approach. Fine mapping revealed that the mutant gene was located on the short arm of chromosome 1 in a 48 kb region. Sequencing of the candidate genes and rapid amplification of cDNA ends-polymerase chain reaction(RACE-PCR) analyses identified the gene, d-h, which encodes a protein of unknown function, but whose sequence is conserved in other cereal crops. Real-time (RT)-PCR analysis and promoter activity assay showed that the d-h gene was primarily expressed in the nodes and the panicle. In the D-h mutant plant, the gene was found to carry a 63-bp deletion in the ORF region, which was confirmed to be directly responsible for the mutant’s gain of a functional phenotype by subsequent transgenic experiments. Since the mutant plants exhibit a defect in the GA response, but not in the GA synthetic pathway, it appears that the d-h gene may be involved in a GA signaling pathway.

In order to cope with the recent global warming and climate change that is projected to have a grave impact on agriculture worldwide, we will direct our focus on developing crops tolerant to multiple abiotic stresses including drought, cold and heat, with the following research activities conducted by three different research groups including an international research team at IRRI. 1) Development of heat/cold tolerant rice variety : Major genes conferring heat tolerance and cold resistance in rice will be identified by comparative transcriptome analyses and new molecular markers will be developed based upon these data. EMS mutagenesis and proteomics analyses will accompany this approach to supplement this gene identification and marker development efforts. Once reliable markers are obtained in this way, new varieties of heat/cold tolerant japonica rice will be bred through introgression of these genes. 2) Development of drought/heat tolerant rice variety : Through QTL mapping conducted on RILs between a drought resistant line and an elite line, genes conferring drought/heat tolerance will be identified and molecular markers will be developed using SNP/GBS genotyping methods. Using these markers, new rice varietis with drought/heat tolerance will be bred by employing marker assisted selection (MAS) as well as marker assisted backcross (MABC). 3) Identification of genes involved in multiple stress responses in ginseng and brassica : Molecular breeding of stress tolerance traits in ginseng and brassica is not well established to date. Taking advantage of the ginseng whole genome sequence data information and other comparative genomics approaches, members of the stress-response transcription factor family CBF/DREB will be identified and their functional analyses will be performed in ginseng and brassica using transcriptome profiling of both wild type and transgenic plants including the adventitious root-derived transgenic ginseng. Major Publications: - Lee, J., W. Jiang, et al. (2011). “Shotgun proteomic analysis for detecting differentially expressed proteins in the reduced culm number rice.” Proteomics 11(3): 455-468. - Ji, H., S. R. Kim, et al. (2010). “Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice.” The Plant journal 61(1): 96-106. - Chin JH, Gamuyao R, Dalid C, Bustamam M, Prasetiyono J, Moeljopawiro S, Wissuwa M, Heuer S (2011) Developing rice with high yield under P-deficiency: Pup1 sequence and application. Plant Physiology 156: 1-15. - Hong-Il Choi, Nam Hoon Kim et al. (2011) Development of Reproducible EST-derived SSR Markers and their application for genomics and breeding of Panax ginseng Journal of Ginseng Research 35(4): 399-412.

The HWC-line of rice showed wide compatibility with both indica and japonica cultivars, tall culm length, long and slender grain shape. For QTL analysis, two F2 populations were derived from the crosses between the HWC-line and each of two Korean variety, Dasanbyeo (Korean Tongil-type cultivar) and Hwacheongbyeo (temperate japonica cultivar), respectively. A total of 190 F2 plants were evaluated in each of two F2 populations. Eight agronomic characters were measured for QTL analysis in F2 populations and parents. Two molecular linkage maps were constructed. In the F2 population from cross between HWC-line / Dasanbyeo (HD) cross, 93 STS markers and 13 SSR markers were mapped on 12 chromosomes, covering a total length of 1942.6 cM, with an average distance of 18.33cM between adjacent markers. In the F2 population from HWC-line / Hwacheongbyeo (HH) cross, 28 STS markers, 29 SSR markers and 1 FNP marker were mapped on 11 chromosomes, spanning a total length of 925.53cM, with an average distance of 15.96cM between adjacent markers. In the F2 population from HD cross, 16 M-QTLs and 1 E-QTL were detected for culm length, spikelets per panicle, spikelet fertility, grain length, grain width, grain shape and 100 grains weight. 7 QTLs of spikelet fertility, grain length, grain width and grain shape were newly identified in this study. In the F2 population from HH cross, 15 M-QTLs were detected for culm length, panicle length, spikelet fertility, grain length, grain width, grain shape and 100 grains weight. 6 QTLs of culm length, grain length, grain width and grain shape were newly identified in this study. The QTLs identified in this study would provide basic information on putative functional genes related agronomic characters and facilitate breed new rice cultivar.