In this study, carbon dioxide concentration and air temperature at different elevations were observed and analyzed in the upper atmosphere of mud flat and reed beds at low tide in Suncheon Bay. The carbon dioxide concentration and air temperature sensors were mounted on the drone, and the carbon dioxide concentration and air temperature by altitude (5 m, 10 m, 20 m, 40 m) at five points in the tidal flat and reed beds were observed in the morning and afternoon. The carbon dioxide concentrations in the upper atmosphere of the tidal flat ranged from 453.0 to 460.2 ppm in the morning and 441.6 to 449.7 ppm in the afternoon. The carbon dioxide concentrations in the upper atmosphere of the reed beds ranged from 448.9 to 452.4 ppm in the morning and 446.0 to 454.4 ppm in the afternoon. The carbon dioxide concentrations in the upper atmosphere of the tidal flat was higher in the morning than in the afternoon, and the carbon dioxide concentration decreased as the altitude increased. The carbon dioxide concentration in the upper atmosphere of the reed beds was similar in the morning and afternoon at all altitudes, and the carbon dioxide concentration decreased as the altitude increased. The correlation coefficient between carbon dioxide concentration and air temperature observed in the tidal flat in the morning was -0.54 ~ -0.77, and the correlation coefficient between carbon dioxide concentration and air temperature observed in the afternoon was 0.56 ~ 0.80. The correlation coefficient between carbon dioxide concentration and temperature observed in the morning in the reed field was low, below 0.3, and the correlation coefficient between carbon dioxide concentration and air temperature observed in the afternoon was 0.35 ~ 0.77. In the upper atmosphere of the tidal flats and reed beds, the linear function was suitable for the change of carbon dioxide concentration as a air temperature, and the coefficient of determination of the estimated linear function was higher in the afternoon than in the morning. Through this study, it was confirmed that the carbon dioxide concentration in the upper atmosphere of the tidal flat and the reed beds was different, and the increase rate of carbon dioxide concentration in the upper atmosphere of the tidal flat and the reed beds was higher in the afternoon than in the morning.