공학 및 과학문제 해석을 위해 적용되는 전산 시뮬레이션은 다양한 변수 혹은 데이터의 변화를 통해 다수의 작업을 생성하고 계산함과 동시에, 생성된 결과를 비교 분석하기 위한 필수적인 기법이다. 본 연구에서는 그리드 컴퓨팅을 활용하여 웹상에서 대용량의 전산 시뮬레이션이 가능한 시스템을 개발하고, 이를 이용한 2가지 실제 응용사례를 제시한다. 첫 번째 응용사례는 e-AIRS(Aerospace Integrated Research Environment)라 명명된 연구포탈이다 e-AIRS는 수치해석 연구자가 대규모의 전산 해석을 실시하고, 실험 연구자가 원격지에서 실험을 요청하고 그 결과를 모니터링 할 수 있는 e-Science 연구환경을 제공한다. 두 번째 응용사례는 대규모 계산환경을 이용한 단백질 구조설계를 제시한다. 제안된 계산환경을 이용하여 생성된 단백질 전산 예측구조와 자연상태 구조를 비교하고, 제안된 계산환경의 유용성을 검토한다.

Powder library of pseudo four components Li-Ni-Co-Ti compounds were prepared for exploring the composition region with the single phase of the layer-type structure by using combinatorial high-throuput preparation system "M-ist Combi" based on electrostatic spray deposition method. The new layer-type compounds were found wider composition region than the previous report. This process is promising way to find multi component functional materials.

The four types of management accounting systems(traditional full costing, direct costing, activity-based costing, throughput accounting) are compared in this study. This paper reviews the differences between throughput and contribution margin. The paper concludes that the definition of totally variable cost(TVC) to calculate throughput is situational specific.

Background : Mulberry (Morus alba L.), renowned for their medicine benefits and the leave as the sole food for silkworm (Bombyx mori). To understanding the molecular mechanism of color formation and nutritive value in different mulberry fruit varieties, we use high-throughput transcriptome sequencing technique to investigated the anthocyanin and betulinic biosynthesis pathway related functional genes. In addition, the total antosyanin and betuinic acid contend were also measured. Methods and Results : The resulting cDNA library was then sequenced using an Illumina HiSeq™ 2000 system. The clean reads were assembled using Trinity software, Then perform gene family clustering to get final unigenes. The pH differential method was used to determine the total anthocyanin content (TAC) of methanol extract from the red and white mulberry, and High-performance liquid chromatography (HPLC) analysis was used to quantify the triterpenes content. In this study, total 50,149 unigenes with an average length of 1,125 nt and N50 equaling 1,861 nt were generated. Using these transcriptome sequecing, cDNAs encoding anthocyanin biosynthetic genes and triterpene biosynthetic genes were isolated. In addition, total anthocyanins and betulinic acid content were analyzed. A great amount of total anthocyanins (59.16 mg/g) were found in fully ripe fruit of Cheongil. Accumulation of betulin and betulinic acid were also detected in all stages of Cheongil and Turkey fruits with small amount. Conclusion : The results of transcriptome sequencing provide useful information at molecular lever in mulberry research, such as interesting gene discovering, marker assisted molecular breeding, and interesting metabolic pathway investigate. The gene expression results could help us understanding of the molecular mechanisms of different fruit color determining factor.

The port throughput situation has changed since the 2008 financial crisis in the US. Therefore, we studied the situation, accurately estimating port traffic of Korean port after the 2008 financial crisis. We ensured the proper port facilities in response to changes in port traffic. In the results of regression analysis, Korean GDP and the real effective exchange rate of Korean Won were found to increase the container throughput in Korean and Busan port, as well as trade volume with China. Also, the real effective exchange rate of Korean Won was found to increase the port transshipment cargo volume. Based on the ARIMA models, we forecasted port throughput and port transshipment cargo volume for the next six years (72 months), from 2015 to 2020. As a result, port throughput of Korean and Busan ports was forecasted by increasing annual the average from about 3.5% to 3.9%, and transshipment cargo volume was forecasted by increasing the annual average about 4.5%.

The world population is projected to reach to 9.6 billion people by 2050. With increasing population and improving living standards, the demand for food is accelerating. In order to meet increasing demand for food while the arable land and other resources are decreasing, agriculture needs all the tools available to sustainably increase crop yields. Development of effective GM traits to protect crops from abiotic and biotic stressors is a critical aspect of sustainable yield improvement. Efficient identification of traits and rapid integration of the traits into commercial elite germplasm requires robust and rapid traits testing. Monsanto have developed numerous high-throughput phenotyping platforms to support rapid trait identification and integration. Selected phenotyping platforms will be reviewed to gain understanding on how they are utilized for trait phenotyping.

Currently, the type of short insertions and deletions (InDels) polymorphisms are increasingly focused in genomic research. InDels have been known as a source of genetic markers that are widely spread across the genome. Genetic relationship among Korean pear cultivars compared with their parents was also identified that they are closely related P. pyrifolia, P. ussuriensis and/or hybrids between two species. Lack of genetic resources including molecular markers has made it difficult to study pears severely. Recently developed next generation sequencing (NGS) platforms offer opportunities for high-throughput and inexpensive genome sequencing and rapid marker development. The main goal of this study was to develop polymorphic InDel markers in ‘Whangkeumbae’ and ‘Minibae’, which were chosen as the representative cultivars of P. pyrifolia and P. ussuriensis × pyrifolia in each among Korean pears using genomic sequences generated by NGS technology. In this study, more than 18.6 Gbp and 15.8 Gbp sequences were obtained from NGS of ‘Whangkeumbae’ and ‘Minibae’, respectively. ‘Whangkeumbae’ contained 197,210 InDels and 197,272 InDels in ‘Minibae’. In InDels validations between ‘Whangkeumbae’ and ‘Minibae’, the number of polymorphic InDels were 149,338 and non-polymorphic InDels were 122,572. For InDel primer set designing, 11,308 of primers were designed from polymorphic InDels and 10,919 of InDel primers were recommended. The study shows that the utility of NGS technology to design amount of efficient InDels and the developed InDel primers will be used for genetic mapping, breeding by marker assisted selection (MAS) and QTL mapping of Korea native pear as well as further genetic studies.

Single nucleotide polymorphisms (SNPs) are the most frequent type among variations found in genomic regions and are valuable markers for genetic mapping, genetic diversity studies and association mapping in plants. There are three basic species known as Korean native which are Pyrus ussuriensis, P. pyrifolia, and P. fauriei. Genetic relationship among Korean pear cultivars compared with their parents was identified that they are closely related P. pyrifolia, P. ussuriensis and/or hybrids between two species. Lack of genetic resources, including molecular markers to study pears are very severe. Recently developed next generation sequencing (NGS) platforms offer opportunities for high-throughput and inexpensive genome sequencing and rapid marker development. The objective of this study was to develop polymorphic SNP markers in ‘Whangkeumbae’ and ‘Minibae’, which were chosen as the representative cultivars of P. pyrifolia and P. ussuriensis × pyrifolia in each among Korean pears, using genomic sequences generated by NGS technology. In this study, more than 18.6 Gbp and 15.8 Gbp sequences were obtained from NGS of ‘Whangkeumbae’ and ‘Minibae’, respectively. ‘Whangkeumbae’ and ‘Minibae’ contained 2,712,288 and 2,747,224 SNPs, respectively. In SNPs validations between ‘Whangkeumbae’ and ‘Minibae’, the number of polymorphic SNPs were 2,516,438 and non-polymorphic SNPs were 1,179,391. For HRM primer design, 2,125,479 HRM candidate primers were obtained from polymorphic SNPs and 343,731 SNP primers were developed. This study shows that the utility of NGS technology to discover efficiently a large number of SNPs and SNP primers can provide valuable information in the genome study of Pyrus spp.

The purpose of this study was to establish a system for plant fluorescence image acquisition and to verify the possibility of plant fluorescence image analysis as a non-destructive method to screen the salt tolerance of soybean (Glycine max). Two-weeks-old seedlings of soybean at the V1 growth stage were treated with 0, 50, and 100 mM of NaCl for salt stress and plant fluorescence images were taken by CCD camera (EOS-600D, Canon, Japan) equipped with band pass filter (XNiteBPB, LPD LLC, USA) at 0, 15, 30, 60, 120 and 240 second after blue light exposure at 1 day after treatment. Red color intensity was extracted using MatLab 8.1 (The MathWorks Inc., USA) for estimation of plant fluorescence intensity. Red color intensity of soybean image decreased 0 (F0-10) to 240 (F240-250) second after blue light exposure irrespective of NaCl concentration, while F0-10/F240-250 decreased with NaCl concentration, resulting in significant relationship with plant fluorescence (Fv/Fm) and salt stress intensity. Therefore, our results suggest that our plant fluorescence image acquisition and analysis methods can be a part of high-throughput screening system for salt tolerance of soybean varieties

We are currently developing a high-throughput single nucleotide polymorphism (SNP) genotyping service at IRRI to accelerate progress in rice breeding by providing rapid and cost-effective marker services. SNP marker development and validation is being performed based on cloned genes and QTLs, GWAS hits, and whole genome sequence data to identify predictive SNP markers at important genes for key traits for the breeding programs. Trait-based and targeted SNPs are being deployed in sets of 24 and 96 SNPs on a Fluidigm EP1 system. At the same time, 384 SNP sets and a 6K SNP chip developed by Susan McCouch at Cornell University are being used for higher density genome scans on an Illumina system. Genotyping by sequencing (GBS) approaches with 96 and 384 barcoded samples per sequence lane are also being evaluated in comparison to SNP array technology based on the number of loci, call rates, turnaround times, and cost per sample. An efficient sample processing workflow with an integrated LIMS is also being optimized to enable high throughput genotyping with sample tracking to minimize errors. Moreover, web-based SNP data analysis tools have been deployed through the IRRI Galaxy workbench to speed up SNP data analysis. Future efforts will focus on large-scale deployment of GBS across breeding materials to enable QC genotyping, tracking of donor introgressions, and integration of genome-wide prediction into the variety development pipelines. The large-scale application of high-density markers will help transform IRRI’s rice breeding programs and increase the rate of genetic gain towards developing high-yielding, stress-tolerant varieties for target environments and market segments

본 논문에서는 위성을 이용한 선박등의 이동중인 물체에 대해 광대역 서비스를 제공하기 위해 고전송율 전송 기법에 대해 연구하였 다. 현재 위성 방송의 표준안은 DVB-S3에 근거를 두고 있으며, 항해 통신 등의 무선 장치를 이용하여 위성을 이용한 통신 서비스를 하기 위해 서는 DVB-S3의 표준안에 근거를 두고 있다. 따라서 본 논문에서는 DVB-S3에서 제시되고 있는 반복 부호 알고리즘인 LDPC부호에 대해 8-PSK 변조 방식을 적용하고 전송률을 증가시키기 위해 FTN기법을 적용한 뒤, FTN으로 인해 열화된 성능을 반복 복호 기법을 통하여 성능 을 향상시키는 방법에 대해 제시한다. 반복 복호 기법은 복호기의 출력값을 경판정하여 수신신호에 대한 새로운 LLR값을 다시 계산한뒤 반복 복호를 함으로써 성능을 향상시키는 방식이다. 본 논문에서는 FTN기법과 8-PSK, 1+7PSK 변조방식이 적용된 DVB-S2 시스템에 BICM-ID기 법을 적용하여 가우시안 채널에서 성능 향상을 확인 하였다.

The main objectives of IRRI’s variety development should meet the needs of customers/farmers from diverse rice sectors in each target region. The dynamic market change asks rapid variety development with highly valued QTLs/genes. Molecular breeding implemented through the efficient crossing, high throughput genotyping and rapid generation advancement will provide packages to breeders to develop new varieties quickly and more economically. The more efficient and cost-effective marker-assisted backcrossing service will provide the more opportunity for the success in molecular breeding platform. To make MABC system more successful, the development of molecular marker system for the high-throughput SNP genotyping is must. Currently Genotyping Service Lab (GSL) of IRRI provides high-throughput SNP genotyping service using BeadXpress and Fluidigm system. Meanwhile, the linked SNP markers for the specific traits are being developed. For abiotic stress tolerances, the markers for submergence, drought, heat, anaerobic germination, salinity, and phosphorus deficiency for Fluidigm system are being developed and tested in variety diversity panel and segregating populations. In MABC, due to the high number of crossings, the labor- and space-saving crossing system is being developed. As a result of an integrated MABC platform will speed up the development of pre-breeding line which are containing single or multiple QTLs/genes.

Polymerase chain reaction (PCR) is highly utilized for QTL analysis, positional cloning of valuable genes, and molecular breeding in crop science. Usually those experiments handle DNA samples of many genotypes (up to several thousands). However, many DNA extraction protocols require longer time using harmful chemicals such as chloroform, phenol, and liquid nitrogen. Here, we introduce a new DNA extraction method for PCR with agarose/PAGE analysis from a diversity panel of rice genotypes identified with yield enhancing traits. This protocol consists of four steps including injection of extraction buffer (20 mM Tris-HCl pH9.5, 200 mM KCl, 2 mM EDTA) into the tubes containing leaf tissues and steel balls, and crushing tissues using Geno-Grinder without liquid nitrogen, sample incubation at 65°C, and then centrifugation for removing cell debris. After centrifugation the crude extracts directly used as template DNA for PCR. Through this protocol we could complete F1 hybridity test from approximately 2,100 plants that come from 96 cross combinations with 13 SSR markers. In addition, we tested the DNA quality by PCR amplification of high GC-rich region and large target size (-2kb). From these results our DNA extraction method produces enough DNA quality for PCR and is suitable for large scale molecular analysis from rice plants.

A dietary deficiency of tryptophan can cause pellagra and lead to low levels of serotonin that is associated with depression, aggression, anxiety and overeating in humans. Thus, enhancement of tryptophan content in rice has great potential benefit for human and animal diets. In this study, a total of 1,350 rice mutant population was used to identify single nucleotide polymorphisms (SNPs) in Oryza sativa anthranilate synthase alpha1(OASA1) gene that was associated with negative feedback in tryptophan biosynthesis. For high-throughput TILLING analysis, 5 fluorescence-labeled primer sets were designed to cover exon regions of OASA1 locus and PCR amplifications were analyzed using ABI3130xl DNA sequencer. Through the screening of 1,350 mutant lines, nine mutant lines produced one or two cleaved fragments in the PCR products of OASA1 locus. The full sequencing of nine mutant lines revealed that total 31 SNPs were located in the regions of OASA1. In particular, three mutant lines contained SNPs in coding regions that resulted in an amino acid change. The tryptophan contents of the three mutant lines were 2.2- to 2.3-fold higher than the wild type. These high-tryptophan mutant lines will be used rice breeding programs and contribute directly to enhancing human nutrition.