Inflammatory bowel disease (IBD) is a chronic condition characterized by continuous inflammation of the gastrointestinal tract that varies in intensity over time. IBD is caused by several factors including aberrant gut flora, immunological dysregulation, altered environmental conditions, and genetic variations. However, the pathogenesis of IBD remains unclear. Studies have indicated that an imbalance between T helper 17 (Th17) and regulatory T (Treg) cells contributes significantly to the development of IBD. Intestinal Tregs suppress inflammation and are critical for maintaining tissue homeostasis. Th17 cells are known to play an important role in the development and pathogenesis of IBD and provide non-inflammatory support for the integrity of the intestinal barrier against bacterial and fungal infections. Therefore, the Th17/Treg cell balance is crucial in the pathogenesis of IBD and gut integrity. The microenvironment of the intestinal mucosal immunity is regulated by the secretion of cytokines associated with Th17 cells and Tregs. Several studies have indicated that the gut bacteria contribute to the control of the immune milieu and play a key role in the regulation of Th17 cell development. Intestinal bacteria and cytokines control Th17 cell development. Th17 cells secrete cytokines that regulate the immune microenvironment in the gut mucosa. This review provides an overview of Th17 cells and examines the strategies for treating patients with IBD using Th17 cell-targeted drugs.

Caprine cryptosporidiosis mainly occurs in young goats, with morbidity rates of 80%–100% and mortality over 50% in goat kids. However, limited research has been conducted on the impact of Cryptosporidium parvum, a diarrhea-causing pathogen, on the intestinal microbiota of goat kids. In this study, 16S rRNA-based metataxonomic analysis was performed to compare the microbial diversity and abundance of the gut microbiota between C. parvum-infected and uninfected goat kids. In total, 12 goat fecal samples were collected, including seven naturally C. parvum-infected and five uninfected goats from Chungcheongbuk-do, Korea. After amplification of the V3–V4 hypervariable region of the bacterial 16S rRNA, high-throughput sequencing was performed. The results showed differences in the microbial composition between C. parvum-infected and uninfected groups based on beta diversity. Firmicutes and Bacteroidetes were the most dominant phyla in both groups. However, no significant difference was observed in the Bacteroidetes/Firmicutes ratio between the two groups. Compared with the uninfected group, the C. parvum-infected group showed significantly higher abundances of Tyzzerella nexillis, Lactobacillus johnsonii, Butyricicoccus pullicaecorum, Enterococcus raffinosus, Enterococcus faecalis, and Negativicoccus massiliensis, and significantly reduced abundances of Aerococcus vaginalis, Faecalicoccus pleomorphus, Oribacterium parvum, and Coprococcus comes. These findings indicate that C. parvum infection, which is associated with diarrhea in neonatal goats, induces alterations in the caprine gut microbiota.

Honeybees are pollinating agent of economic importance, and a model organism for microbiome analysis. The microbiota plays a great role in honeybee health and development as such needs to be fully elucidated among Apis mellifera in Korea. using 16S rRNA gene illumina sequencing, the gut microbiota of Apis mellifera at four developmental stages under natural condition shows dysbiosis of essential microbiota, especially between the 5-days larvae and workers.

Peri-implantitis is a disease affecting the tissue surrounding dental implants, destroying both soft and hard tissues. A total of 2,015 studies were collected by searching items in the National Library of Medicine, including keywords, such as “peri-implantitis,” “microbiota,” and “microbiome.” Of them, 62 studies were screened and considered eligible for analysis. Only 16 studies qualified all criteria mentioned here: “Using PCR methods for microorganism detection,” “Suggesting quantified results,” “Stating obvious clinical diagnosis criteria (“Bleeding on probing,” “Probing pocket depth,” “Suppuration,” and “Radiographic bone loss”).” Only 8 studies were included in the meta-analysis because the others had special issues. Porphyromonas gingivalis , Tannerella forsythia , Treponema denticola , Aggregatibacter actinomycetemcomitans, Prevotella intermedia , and Epstein-Barr virus were the microbiological subjects of analysis. The odds ratio (OR) between the healthy implants and peri-implantitis were calculated for each microorganism to compare two groups, and the forest plots were suggested as the visual materials. P. gingivalis (1.392 < OR < 2.841), T. forsythia (1.345 < OR < 3.221), T. denticola (2.180 < OR < 5.150), A. actinomycetemcomitans (1.975 < OR < 6.456), P. intermedia (1.245 < OR < 3.612), and Epstein-Barr virus (1.995 < OR < 9.383). The species showed that their 95% confidence interval of odds ratio was higher than 1, indicating that they were detected more frequently in periimplantitis than in healthy implants. Meanwhile, other species, such as Fusobacterium nucleatum and Staphylococcus aureus, were not included in the meta-analysis because the number of studies was insufficient.

Prebiotics are known as components of intestinal microbiota that can improve and maintain human health status by stimulating the growth and activity of the intestinal tract as a method of controlling the intestinal environment. In this study, we examined whether 2’-fucosyllactose (FL) could affect intestinal microbial population and bowel activity. Water content and frequency of mouse feces were increased in the 2’-FL treated group at a high concentration (1,000 mg/kg), with brightness of the color enhanced and physical properties diluted. In addition, intestinal microbial analysis showed that harmful bacteria Clostridium and Staphylococcus strains were decreased and beneficial bacteria such as Lactobacillus strains were markedly increased in the group treated with a high concentration of 2’-FL compared to those in the control group. These findings suggest that administration of 2’-FL can maintain healthy bowel activity by reducing harmful bacteria population and improving diluted physical properties.

Microalgae are a group of photosynthetic microorganisms living in the water. They are in the spotlight as biostimulators and biofertilizers in modern renewable and sustainable agriculture system, attributed to characteristics such as photosynthetic, and metabolism of various industrial wastes and to increase production when treating crops. Scenedesmus sp. CHK0059 is also one of the microalgae with these characteristics, and it has been reported to suppress various diseases in crops and promote the health of vegetables. However, the mode of action that has a positive effect on plants is not yet well understood. This study was designed to focus on the modulation in diversity change of plant microbiota community, which was the result of the preliminary study, and to determine the direct changes in microbial members that trigger the diversity change in the Arabidopsis model system. As a result, there was no change in the phenotype of Arabidopsis and the microbiota community structure in the rhizosphere during the treatment period, but two bacteria genera, Brevibacterium and Pseudomonas, dominance in the rhizosphere was positively correlated with the CHK0059 treatments. And the bacteria had a positive network correlative relationship with 24 other bacteria. Our findings suggest that the application of microalgae was correlated with several microbiota members in the rhizosphere and was expected to affect the microbiota community structure modification in long-term treatment.

Accurate identification of microbes facilitates the prediction, prevention, and treatment of human diseases. To increase the accuracy of microbiome data analysis, a long region of the 16S rRNA is commonly sequenced via paired-end sequencing. In paired-end sequencing, a sufficient length of overlapping region is required for effective joining of the reads, and high-quality sequencing reads are needed at the overlapping region. Trimming sequences at the reads distal to a point where sequencing quality drops below a specific threshold enhance the joining process. In this study, we examined the effect of trimming conditions on the number of reads that remained after quality control and chimera removal in the Illumina paired-end reads of the V3–V4 hypervariable region. We also examined the alpha diversity and taxa assigned by each trimming condition. Optimum quality trimming increased the number of good reads and assigned more number of operational taxonomy units. The pre-analysis trimming step has a great influence on further microbiome analysis, and optimized trimming conditions should be applied for Divisive Amplicon Denoising Algorithm 2 analysis in QIIME2 platform.

버섯의 섭취는 버섯의 유용 성분에 의해 면역체계 및 장내미생물균총의 변화를 유발한다. 그중 많이 알려진 β- glucan 구조 기반 물질들은 염증매개물질의 분비는 억제 하고 대식세포의 활성은 유발하여 면역력의 증진을 도와 인체의 면역기능을 증진시킨다. 직접적인 유용 성분 이외의 다른 물질은 장내 미생물균총에 의해 단쇄지방산으로 변화되며, 변화된 단쇄지방산은 면역 및 다양한 질병의 완화를 유발하게 된다. 버섯이 포함하고 있는 성분은 β- glucan 외에도 장내미생물균총을 변화하게 유도하는 prebiotic로써의 역할을 수행하게 된다. 변화된 장내미생물 균총은 외부로부터 들어오는 다양한 감염성 균의 감염을 막으며, 면역체계의 균형 유지를 도우며, 질병을 예방하게 된다. 국내 섭취 빈도가 높은 새송이, 표고, 느타리, 팽이, 목이, 양송이 버섯의 유용 성분의 탐색, 장내미생물균총의 변화 및 섭취 시 인체의 단쇄지방산 변화 연구는 추후 버섯의 유용 성분, 장내미생물 및 질병과의 인과관계를 풀어내는데 기여할 것으로 여겨진다.

본 연구의 목적은 출산 전 필라테스 운동과 프로바이오틱스 섭취가 출산 후 여성의 장내미생물, 신체구성, 혈중지질, 비만호르몬, 염증성 사이토카인에 미치는 영향을 알아보는데 있다. 총 15명의 임산부를 운동+프로바이오틱스섭취군(PEX, n=5), 운동군(EX, n=5), 대조군(CON, n=5)으로 구분하였다. PEX 집단과 EX 집단은 8주 동안 주 2회 필라테스 운동에 참여하였고 준비운동 10분, 본 운동 30분, 정리운동 10분으로 실시하였으며, PEX 집단은 매일 공복에 프로바이오틱스 1 캡슐을 섭취하였다. 그 결과 출산 후 PEX 집단의 체지방 및 WHR 수치가 감소하였다. 장내미생물의 변화는 비피도박테리움, 락토바실러스, 클로스트리디움, 퍼미큐테스, 박테리오데스의 구성 수준에서 집단 간 유의한 차이가 나타나지 않았다. 비만 호르몬과 염증성 사이토카인의 변화는 PEX 집단에서 사후 렙틴, IL-6, TNF-a 수치가 감소하는 것으로 나타났고, 혈중 지질 수준에서는 차이가 없었다. 결론적으로 출산 전 필라테스와 프로바이오틱스 병행 처치는 출산 후 여성의 복부지방 감소에 효과적이며 염증 및 비만 관련 호르몬에 긍정적인 영향을 주어 산후 빠른 회복에 도움이 될 것이다.

장내 미생물과 숙주의 면역시스템은 상호 조절을 통해서 공진화 되어 왔다. 미생물은 부분적으로 대사물질을 생산하여 숙주 면역시스템을 조절한다. 면역세포는 대사 특이적인 수용체로서 P2X7, GPR41, GPR43, GPR109A, AhR, PXR, FXR, TGR5 등을 발현한다. 대변 은행은 rCDI 환자 치료를 위해 2013년부터 세계 각국에서 설립되고 있으며, 2017년 유럽에서 기증자 선발, 대변 준비, 대변 전이와 임상 관리, FMT 센터 운영을 위한 기본 요소 기준에 대하여 실무 중심의 의견 보고서를 발표하였다. CDI를 제외한 다른 질병 치료를 위한 FMT의 이용은 미국 식품의약국(FDA)으로부터 시험용 신약(IND) 승인을 받아야 한다. 따라서 FMT는 항생제로 제거가 불가능한 CDI 치료를 위하여 임상 실무에서 이용이 증가하고 있다. 비만에 대한 FMT 이용은 쥐에 대한 결과가 대부분이며, 비만쥐에서 Bacteroidetes가 감소하고 Firmicutes가 증가하였다. 동물의 생산성 향상을 위하여 사람 FMT의 표준 방법을 이용할 수 있다. 동물에서는 대변 미생물의 구강 투여가 적절한 방법이며, 동물 산업의 잠재적 대규모 수요를 충족시키기 위해서 품종에 따른 대변 은행의 설립이 필요하다.

Radiotherapy (RT) is a mainstay in the treatment of head and neck squamous cell carcinoma (HNSCC). For locally advanced HCSCC, concurrent chemoradiotherapy (CCRT) benefits HCSCC patients in terms of better survival and loco-regional control. In this study, we evaluated changes in oral microbiota in patients, who received CCRT for head and neck cancer. Oral rinsed samples were weekly collected before and during CCRT and at 4 weeks following treatment from HNSCC patients, who had received 70 Gy of radiation delivered to the primary sites for over 7 weeks and concurrent chemotherapy. Oral microbiota changes in three patients were analyzed by next-generation sequencing using 16S rRNA 454 pyrosequencing. On an average, 15,000 partial 16S rRNA gene sequences were obtained from each sample. All sequences fell into 11 different bacterial phyla. During early CCRT, the microbial diversity gradually decreased. In a patient, who did not receive any antibiotics during the CCRT, Firmicutes and Proteobacteria were the most abundant phylum. During the early CCRT, proteobacteria gradually decreased while Firmicutes increased. During the late CCRT, firmicutes gradually decreased while Bacteroides and Fusobacteria increased. In all the patients, yellow complex showed a gradual decrease, while orange and red complex showed a gradual increase during the CCRT. At 4 weeks after CCRT, the recovery of oral microbiota diversity was limited. During CCRT, there was a gradual increase in major periodontopathogens in association with the deterioration of the oral hygiene. Henceforth, it is proposed that understanding oral microbiota shift should provide better information for the development of effective oral care programs for patients receiving CCRT for HNSCC.

The present study was conducted to investigate the effects on growth performance, nutrient digestibility, and gut health of broiler chickens when a dietary supplementation of multienzymes was added to diets, containing different energy levels. A total of 480 broiler chickens of similar body weight (Ross 308, 1-day-old) were randomly subjected to four treatments. The dietary treatments included a corn-soybean meal-based diet supplemented with: multienzyme (amylase+protease+ mannanase+xylanase+phytase), 0.05% enzyme, and different energy levels (3010 and 3060 kcal/kg). The experimental diets were fed to the chicks in a mash form for 35 days in two phases (1–21 d, phase I; and 22–35 d, phase II). During the overall period, chicks fed with diets supplemented with multienzymes had a better weight gain (p<0.05) and feed conversion ratio (FCR) than those fed with diets without enzymes. There was no difference in the growth rate and FCR among the chicks fed with diets supplemented with enzymes, even though the dietary energy levels were different. The apparent fecal and ileal digestibility of dry matter, gross, crude protein, calcium, and phosphorus were significantly enhanced (p<0.05). The population of cecal and ileal Lactobacillus spp. was significantly increased (p<0.05), and Clostridium spp. and coliforms were significantly decreased (p<0.05) in diets supplemented with enzymes. Villus height and villus height to crypt depth ratio in the small intestine was also significantly enhanced (p<0.05) in diets supplemented with enzymes. In conclusion, multienzyme supplementation had positive effects on the weight gain of broilers, FCR, digestibility of nutrients, and on the growth of intestinal microbiota.

본 연구는 농후사료의 급여수준을 달리하여 제주산마 에게 급여하는 경우에 체중 변화, 장내 미생물 조성 및 혈액성상의 변화에 미치는 효과를 구명하기 위하여 수행 되었다. 공시축으로 24-36개월의 제주산마(제주마×더러브 렛) 14두를 공시하였으며, 농후사료의 급여수준을 체중의 1.5%(5두), 2%(4두)와 2.5%(5두)로 급여하여 봄과 겨울 증 체율 및 혈액 특성과 생리적 변화를 조사하였다. 봄에 총 증체량은 1.5%, 2%, 2.5% 급여한 처리구에서 12.6kg, 21.5kg, 29.0kg, 겨울에 총 증체량은 21.6kg, 28.0kg, 42.6kg을 나타냈고, 일당 증체량은 봄에는 0.23kg, 0.39kg, 0.54kg, 겨울에는 0.40kg, 0.52kg, 0.79kg을 나타내어 체중의 2.5%를 섭취한 구에서 높은 경향을 나타내었다. 내독 소는 농후사료 과다 섭취에 의해 그람음성균의 세포벽에 서 방출되는 물질로 봄에 시행한 시험에서 3주차 때 농 후사료를 체중의 2%와 2.5%를 급여한 처리구에서 유의 적으로 낮은 결과를 나타내었으나(p<0.05) 이후에는 점차 모든 처리구에서 수치가 비슷해져 적응하는 경향을 보여 모든 처리구가 농후사료 급여에 적응하는 경향을 보였다. 봄에 실시한 실험에서 8주차에 분 pH는 농후사료를 체 중의 1.5%, 2%, 2.5% 급여한 처리구에서 각각 6.2, 5.8, 5.7로 나타나 농후사료를 체중의 2%와 2.5%를 급여한 처 리구에서 유의적으로 낮은 결과를 나타내었다(p<0.05). 직장온도는 겨울에 실시한 실험에서 8주차에 농후사료를 1.5%, 2%, 2.5%. 급여구에서 각각 37.8℃, 37.9℃, 38.4℃ 를 나타내어 농후사료 2.5% 급여구에서 직장온도가 유의 적으로 높은 수치를 나타내었다(p<0.05). 분내 미생물에 서는 셀룰로오스와 탄수화물(구조 탄수화물) 분해에 관여 하는 미생물로 알려진 Fibrobacter가 체중의 1.5% 급여했 을 경우 총 미생물군에서 2.49%를 차지하였고, 2%와 2.5% 급여구에서는 각각 1.42%와 1.09%를 차지하여 농후 사료 급여량이 증가할수록 유의적으로 감소하는 경향을 보였다. 결론적으로 농후사료 2.5%의 급여가 비육마 사육 방법으로 활용할 수 있을 것으로 사료된다.

The presence of distinct bacterial species is found to be dependent on age, diet, and disease. We compared the detection rate of several oral bacterial strains in a cohort of 36 subjects including healthy volunteers, periodontal patients, and oral cancer patients. Gargling samples were obtained from these subjects from which DNA was then extracted. Specific primers for 29 bacterial species were used for PCR detection. In the oral cancer patients, Capnocytophaga ochracea, Gemella morbillorum, and Streptococcus salivarius were detected more frequently compared with the healthy volunteers and periodontitis patients. Fusobacterium nucleatum/ polymorphym and Prevotella nigrescens were significantly less prevalent in oral cancer patients than the other groups. In periodontitis patients, Porphyromonas gingivalis and Treponema denticola were more frequently found compared with the healthy volunteers. In the healthy volunteer group, Peptostreptococcus anaerobius was more frequently found than the other groups. The detection rate of several oral bacterial species was thus found to differ between healthy volunteers, periodontitis patients and oral cancer patients.

Ginseng, the root of the Panax ginseng, has been widely used as a traditional herbal medicine in Korea, China, and Japan for thousands of years. Now ginseng has become popular as functional health food and natural medicine and it is one of the bestselling natural products in the world. Gut microbiota has been found to play an important role in the metabolism and pharmacological action of orally administered ginseng. Recent animal and clinical studies have shown that compound K (20-O -beta-D-glucopyranosyl-20(S)-protopanaxadiol, CK) is the major ginsenoside metabolite deriving from gut microbiota-induced biotransformation and is more efficiently absorbed into the systemic circulation than its parent ginsenosides. Since ginsenoside metabolism varies between individuals depending on the population of gut microbiota, much attention paid to the transformation of major ginsenosides into more pharmacologically active ginsenosides using diverse methods including heating, acid hydrolysis, microbial conversion, and enzymatic treatment. Recently, in food and drug industry and academia, the development of fermented ginseng products using probiotic bacteria is being intensively studied due to the potential health benefits of ginsenoside metabolites and probiotics. This review summarizes recent studies on the metabolism of ginsenoside by gut microbiota and biotransformation of ginsenoside using lactic acid bacteria and their enzymes.

Demand for the development of non-antibiotic growth promoters (AGP) in animal production surged in recent years. However, elucidating the specific mechanisms and action of prebiotics, probiotics, and synbiotics as non-AGP in animals is still in progress. This work investigated and compared faecal microbiotas of weaned piglets under the administration of a basal diet (CON) and with prebiotic lactulose (LAC), probiotic Enterococcus faecium NCIMB 11181 (PRO), or their synbiotic combination (SYN). Although prebiotics and/or probiotics in the diet significantly increased alpha-diversity compared with CON values, no differences were detected in richness and diversity values among the treatment groups (LAC, PRO, and SYN). At phylum level, the Firmicutes to Bacteroidetes ratio increased in the treatment groups in comparison to the CON group, and the lowest abundance of Proteobacteria was found in LAC group. At family level, Enterobacteriaceae decreased in all treatments, especially more than 10-fold reduction in LAC group compared with CON group. At genus level, the highest abundance of Oscillibacter was detected in PRO group, the highest Clostridium in LAC group, and the highest Lactobacillus in SYN group; the abundance of Escherichia was lowest in LAC group. Clustering in the DAPC plots illustrated distinct separation of the feeding groups (CON, LAC, PRO, and SYN) from one another, showing that microbial communities had different compositions according to different feed additives. Effects of LAC and PRO treatments on the faecal microbiota suggest independent mechanisms; nonetheless, the impact of SYN might also be distinct from that when each are administered singly as LAC or PRO.

Social needs are increasing due to the increase of degenerative brain diseases because of the aging society. The most common type of degenerative brain diseases is Alzheimer's disease and Parkinson's disease, which makes most of cases. New scientific challenges indicate that gut microbiota are directly associated with the progress of degenerative brain diseases through triggering metabolic diseases, modulating immune response, and changing diversity of microbial community. A high-valuable strategy is proposed for the management of these disorders and as an adjuvant for psychiatric treatment of degenerative brain diseases and other related metabolic diseases through modulation of the gut microbiota including probiotics.

화장품 및 화장품 함유 방부제에 대한 병원미생물과 사람의 피부서식세균들의 증식에 미치는 효과를 조사하였다. 파라벤, 1,2-헥산디올, 페녹시 에탄올과 같은 방부제를 함유한 토너, 에멀젼, 크림, 유아용크림은 포도상구균, 대장균, 녹농균에 대해 강한 방부효과를 보였으며, 파라벤, 1,2-헥산디올, 페녹시 에탄올과 같은 방부제들은 포도상구균, 대장균, 녹농균과 같은 병원균 및 Staphilococcus epidermidis, Shigella flexneri, Enterobacter aerogenes 등과 같은 일부 피부서식세균에 대한 강한 항균효과를 보였다. 사람의 피부에 페녹시 에탄올 함유 크림을 도포하였을 때, 피부서식 미생물들의 구성이 바뀌었다. 문 수준에서는 Proteobacteria가 증가하였고, 종 수준에서는 4P004125_s가 증가하였고, Propionibacterium humerusii 감소하였다. 이 결과들로부터 파라벤, 1,2-헥산디올, 페녹시 에탄올과 같은 방부제는 병원균에 대한 항균효과를 가짐과 동시에 페녹시 에탄올을 함유한 화장품은 피부세균군집에 변화를 줄 수 있음을 시사하고 있다.