Mungbean (Vigna radiata) is a fast-growing, warm-season legume crop that is primarily cultivated in developing countries of Asia. We constructed a draft genome sequence of mungbean to facilitate genome research into the subgenus Ceratotropis and to enable a better understanding of the evolution of leguminous species. The draft genome sequence covers 80% of the estimated genome, of which 50.1% consists of repetitive sequences. In total, 22,427 high confidence protein-coding genes were predicted. Based on the de novo assembly of additional wild mungbean species, the divergence of what was eventually domesticated and the sampled wild mungbean species appears to have predated domestication. Moreover, the de novo assembly of a tetraploid Vigna species (Vigna reflexo-pilosa var. glabra) provided genomic evidence of a recent allopolyploid event. To further study speciation, we compared de novo RNA-seq assemblies of 22 accessions of 18 Vigna species and protein sets of Glycine max and Cajanus cajan. The species tree was constructed by a Bayesian Markov chain Monte Carlo method using highly confident orthologs shared by all 24 accessions. The present assembly of V. radiata var. radiata will facilitate genome research and accelerate molecular breeding of the subgenus Ceratotropis.

Salicornia europaea (glasswort) is succulent, annual, halophytic plant mainly distributed throughout reclaimed land or salt marsh. It has strong tolerance to salt so that it plays the part of the pioneer species in the first succession. According to domestic and foreign studies, S. europaea contains plenty of minerals and antioxidant in the body. Since people take note of an availableness of this plant as health diet, the natural growth sites are threatened. In addition to development of salt marsh and sea shore, imprudent harvest has a bad effect to S. europaea population maintenance. To seek ways to preserve the population of this plant, we carried out the continuity of seed germination and restoration test. Seokmo Island, Daebu Island, Youngjong Island and Sudokwon landfill in Korea are selected sites for research. Result of germination continuity shows that most S. europaea seeds germinate on March but no more after July. However the germination was occurred after that time in the greenhouse. So we concluded that no germination after July is a matter of environmental condition not the number of remaining seeds. Also germination was seldom occurred in the spot where seeds production was not happened. In result of continuity test of seed germination by soil depth, germination was occurred vigorously only in top soil. From these results, we note that most S. europaea germinate in the early spring, and germination is finished by July. And this rapid germination speed makes the number of seeds in soil seed bank rare. If a large number of S. europaea in some area are harvested after July, the number of this species will dramatically decrease in that area the following year. In Seokmo Island, we carried out reintroduction experiment by sowing S. europaea seeds. On the first year, a small number of S. europaea settled and they produced seeds successfully. On April 2010, the second year, we observed many S. europaea in seed sowing sites. And we found out that plowing is more efficient than treatment sea water for settlement of S. europaea.

Harvesting of marshfire glasswort (Salicornia europaea) by local people has been increased recently since this plant was known for a well-being food. Even though some harvesting sites are facing high risk of environmental pollution, Salicornia europaea is still harvested on a large scale. Therefore, to investigate safety of Salicornia europaea as a food resource, salt marsh environment, potential harvestable biomass, element and heavy metal accumulations in Salicornia europaea has been studied in three salt marshes, west-coast of Korea. Salicornia europaea showed 150 – 230g/㎡/yr harvestable biomass. Biomass and nitrogen contents of Salicornia europaea were closely related to soil nitrogen and carbon concentrations. Average Na, Zn, Fe, Cr accumulations in Salicornia europaea were 41479, 18, 297, 1.5 (mg/kg), indicating valuable trace element contents. However, average heavy metal accumulations such as As, Cd, Cu, Pb, Hg accumulations were 1.5, 7.1, 4.2, 1.5, 0.1 (mg/kg), which were even or higher than national standards (0.5, 0.5, 2, 2, 0.1) of salts. These results imply that harvesting and eating of Salicornia europaea in west-coast research sites would be harmful because the contents would be much higher if it is calculated as only considering salts and minerals. Therefore, harvesting of Salicornia europaea from some salt marsh in west-coast of Korea should be done cautiously.

The canine major histocompatibility complex (MHC) is referred to dog leukocyte antigens (DLA), which is known to be the most polymorphic genetic system in canine species. Many cloned dogs have been produced since Snuppy, first cloned dog, there was no research about genetic identity of MHC among cloned animals. Recently in Lee’s group, two non-transgenic cloned beagles (BG1, 2) were produced by somatic cell nuclear transfer (SCNT) using fetal fibroblast (BF). Also, four transgenic cloned beagles (Ruppy 1-3, 5) were generated using transgenic BF transfected with Red fluorescent protein (RFP) gene. We hypothesize that non-transgenic (BG1, 2) and transgenic (Ruppy 1-3, 5) cloned beagles derived from identical donor cells have the same immunological genetic characteristic except for RFP gene insertion in the genome. Thus, the aim of this study is to confirm the immunological identity of DLA class II in cloned beagles produced using same nuclear donor cell. Genomic DNA was extracted from blood of BG1, BG2, Ruppy 1, 2, 3 and 5. Genomic DNA of normal two control beagle, no correlation with BF was also investigated for rulling out the possibility that beagles were inbred. Forward and reverse primers used for DLA-DQA1 and DQB1 respectively were DQAF: 5’-TAAGGTTCTTTTCTCCCTCT-3’ and DQAR: 5’-GGACAGATTCAGTGAAGAGA-3’ DQBR:5’-CTCACTGGCCCGGCTGTCTC-3’ and DQBR: 5’-CACCTCGC CGCTGCAACGTG-3’. Polymerase Chain Reaction (PCR) products were purified, sequenced directly using the Big Dye Terminator kit. Sequencing analysis was performed on an automated 3730xl DNA analyzer. In experiment 1, sequence of DLA-DQ alpha 1 (DQA1) and DLA-DQ beta 1 (DQB1) exon 2, hypervariabel region, was compared in BG1 and BG2. Experiment 2 also compared the sequence of DQA1 and DQB1 among Ruppy 1, 2, 3 and 5. Experimental 3 compared sequence of DQA1 and DQB1 among all cloned dogs (BG1, BG2 and Ruppy 1-3, 5). As a result, BG1 and BG2 have same allele for DQA1 and DQB1 as we expected. They share DQA1*00101 and DQB1*02901 in experiment 1. In experiment 2, Ruppy 1, 2, 3 and 5 also have identical DQA1*00101 and DQB1*02901 allele. No discrimination between transgenic dogs and cloned dogs was seen in DQA1 and DQB1 Allele in experiment 3. DQA1, DQB1 allele was identified as *00101 and *02901 in all dogs. We provided the allele identity of DQA1and DQB1 in cloned beagles, which can be used as preliminary data for immunological related studies. In conclusion, transgenic cloned dogs despite of red fluorescent protein genes being inserted in their nuclear DNA were immunologically compatible with non-transgenic cloned dogs. We demonstrated that cloned beagles produced using identical nuclear donor were immunologically compatible.

We investigated the ecological characteristics of reed populations growing in Korea and tried to select reed populations showing better growth patterns in waste landfill leachate. To examine the growth characteristics, 14 reed populations from various habitats were collected. Four reed populations were from inland reclaimed habitats, 4 reed populations from brackish or salt marsh habitats, and 6 reed populations from fresh water habitats. Total plant biomass after the treatment with landfill leachate showed that Daebudo and Nanjido reed populations had the higher biomass with 3755 g DW/pot and 3305 g DW/pot, respectively. Reed populations being sampled from the higher salinity and landfill habitats had relatively higher total biomass than that of other reed populations. Especially reed populations from landfill habitats showed higher biomass. Reed populations from Songjiho and Daebudo, which were believed to have tolerance to salt stress, also showed good growth patterns. Population from the fresh water habitats exhibited relatively lower tolerance to leachate treatment compared to others. From the results, we could conclude that reed populations from Nanjido and Daebudo with higher biomass and better salt tolerance were able to good candidates for purification of waste landfill leachate.

We have studied bioremediation of effective microorganisms on crude oil spill in Taean, west-coast of Korea. Oil contaminated soil samples were collected on December 14, 2007, seven days after the Hebei Spirit oil-spilled accident. Total petroleum hydrocarbon (TPH) was measured to evaluate the effectiveness of effective microorganisms (EM) which were composed with yeast, photosynthetic bacteria and lactic acid bacteria on oil degradation. TPH concentration before EM treatment was 323.8 mg/kg, whereas TPH concentrations on 2 days after EM treatment and that of control (without EM) was 102.1 mg/kg and 170.6 mg/kg, respectively. On six days after EM treatment TPH was 91.3 mg/kg and that of control was 127.7 mg/kg. Percentages of degraded crude oil were 47.3% without EM and 68.5% with EM, 60.6% without EM and 71.8% with EM on 2 and 6 days after EM treatment, respectively. These results clearly showed that the application of effective microorganisms toward oil-contaminated soil was quite useful to degrade crude oil spill. These results were derived from the effects of biostimulation of microbial media nutrients and bioaugmentation of effective microorganisms. If we carefully apply these effective microorganisms, it can be a useful bioremediation method to recover oil-contaminated marine ecosystems.

In this study, the PHYTO-PAM-fluorometric method was used to evaluate the ETRmax in terms of sensitivity to DIN/DIP against 14 microalgae: Prorocentrum micans, Heterocapsa triquetra, Gymnodinium impudicum, Gymnodinium catenatum, Amphidinium caterae, Chlorella vulgaris, Chroococcus minutus, Microcystis aeruginosa, Chlorella ellipsoidea, Nannochloris oculata, Oocystis lacustris, Chroomonas salina, Gloeocystis gigas, and Prymnessium parvum. We found that P. micans, H. triquetra, and A. caterae exposed to the maximum level of DIN/DIP were significantly smaller in the ETRmax than that of the minimum and moderate mixture. Unlikely the ETRmax, the initial slope alpha was not significantly different at the level of 60 DIN/DIP. In G. catenatum, the moderate levels of 15 and 20 in DIN/DIP were found to be significantly different from the ETRmax at Ch1-Ch4. Gymnodinium impudicum had a higher value than that of the ETRmax than that of dinoflagellates used in this study, ranging from 306.1 (Ch4, DIN/DIP: 10) to 520.1 (Ch4, DIN/DIP: 30). The ETRmax value obtained from other microalgae was similar to G. impudicum at any of the ratios of DIN/DIP and channels. Consequently, the influence of offshore water current assures us of the suppression of photosynthesis and electron transport rate in dinoflagellates. Gymnodinium impudicum has not been researched in the area of red tides in Korea, but it will be enough to creat the massive algal blooms in the future because of higher potential photochemical availability.